SNP Profiles of MAN 15/2 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GT	CT	GG	AC	CG	AG	TT	AG	GG	AA	AG
1._RUQ_86	_	_	CC	_	_	_	_	_	AG	_	AG	_	_	_
2._MAN_15_/2_[BRA]	_	_	CC	GT	CT	_	AC	CG	AG	TT	_	_	AA	AG
3._MAN_15_/2_[BRA]	_	_	CC	GT	CT	_	AC	CG	AG	TT	_	_	AA	AG
4._GC-05-072-2-23	TT	CC	CC	GT	CC	GG	AA	CG	AA	TT	AG	GG	AA	AG
5._GC-05-072-2-23	TT	CC	CC	GT	CC	GG	AA	CG	AA	TT	AG	GG	AA	AG
6._GC-05-072-2-23	TT	CC	CC	GT	CC	GG	AA	CG	AA	TT	AG	GG	AA	AG
7._GC-05-072-2-23	TT	CC	CC	GT	CC	GG	AA	CG	AA	TT	AG	GG	AA	AG
8._GC-05-072-2-23	TT	CC	CC	GT	CC	GG	AA	CG	AA	TT	AG	GG	AA	AG
9._RUQ_86	_	_	CC	GT	CT	_	AC	CG	AG	TT	_	_	AA	AG
10._MAN_15_/2_[BRA]	_	_	CC	GT	CC	_	AA	CG	AA	TT	_	_	AA	AG
11._MAN_15_/2_[BRA]	_	_	CC	GT	CC	_	AA	CG	AA	TT	_	_	AA	AG
12._MAN_15_/2_[BRA]	_	_	CC	GT	CC	_	AA	CG	AA	TT	_	_	AA	AG
13._MAN_15_/2_[BRA]	_	_	CC	GT	CC	_	AA	CG	AA	TT	_	_	AA	AG
14._MAN_15_/2_[BRA]	_	_	CC	GT	CC	_	AA	CG	AA	TT	_	_	AA	AG
15._MAN15/2[BRA]	_	_	CC	_	CT	GG	AC	CG	AG	_	_	GG	AA	_
16._MAN_15_/2_[BRA]	_	_	CC	GG	CT	_	AC	CG	GG	CC	_	_	AA	AA
17._RUQ_86	AA	CC	CC	AC	AG	GG	AC	CG	AG	AA	AG	GG	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
1._RUQ_86	AC	_	_	GG	AC	CT	_	CC	GG	AG	_	AC	GG	_
2._MAN_15_/2_[BRA]	AC	CC	GT	GG	AC	_	CC	_	GG	_	_	_	GG	_
3._MAN_15_/2_[BRA]	AC	CC	GT	GG	AC	_	CC	_	GG	_	_	_	GG	_
4._GC-05-072-2-23	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
5._GC-05-072-2-23	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
6._GC-05-072-2-23	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
7._GC-05-072-2-23	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
8._GC-05-072-2-23	AC	CC	GT	CG	AC	CT	CC	CC	GG	AG	TT	AC	GG	CC
9._RUQ_86	AC	CC	GT	GG	AC	_	CC	_	GG	_	_	_	GG	_
10._MAN_15_/2_[BRA]	AC	CC	GT	CG	AC	_	CC	_	GG	_	_	_	GG	_
11._MAN_15_/2_[BRA]	AC	CC	GT	CG	AC	_	CC	_	GG	_	_	_	GG	_
12._MAN_15_/2_[BRA]	AC	CC	GT	CG	AC	_	CC	_	GG	_	_	_	GG	_
13._MAN_15_/2_[BRA]	AC	CC	GT	CG	AC	_	CC	_	GG	_	_	_	GG	_
14._MAN_15_/2_[BRA]	AC	CC	GT	CG	AC	_	CC	_	GG	_	_	_	GG	_
15._MAN15/2[BRA]	_	_	_	CG	AC	CT	_	_	_	_	_	_	CC	GG
16._MAN_15_/2_[BRA]	CC	CT	TT	CG	AA	_	CT	_	GG	_	_	_	GG	_
17._RUQ_86	AC	_	AC	CG	AC	AG	GG	_	CC	AG	AA	AC	CC	_

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	TT	AA	CC	CT	GG	AG	TT	CT	CT	CC	CG	AA	X_X	X_X
1._RUQ_86	_	AA	CC	_	_	_	_	_	_	_	CG	_	X_X	X_X
2._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
3._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
4._GC-05-072-2-23	CT	AA	CC	CT	GG	AG	TT	TT	CT	CC	CG	AA	X_X	X_X
5._GC-05-072-2-23	CT	AA	CC	CT	GG	AG	TT	TT	CT	CC	CG	AA	X_X	X_X
6._GC-05-072-2-23	CT	AA	CC	CT	GG	AG	TT	TT	CT	CC	CG	AA	X_X	X_X
7._GC-05-072-2-23	CT	AA	CC	CT	GG	AG	TT	TT	CT	CC	CG	AA	X_X	X_X
8._GC-05-072-2-23	CT	AA	CC	CT	GG	AG	TT	TT	CT	CC	CG	AA	X_X	X_X
9._RUQ_86	CT	AA	_	CT	_	_	_	_	_	CC	CG	AG	X_X	X_X
10._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
11._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
12._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
13._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
14._MAN_15_/2_[BRA]	CT	AA	_	CT	_	_	_	_	_	CC	CG	AA	X_X	X_X
15._MAN15/2[BRA]	CT	_	_	CT	_	AG	TT	_	CT	_	CG	_	X_X	X_X
16._MAN_15_/2_[BRA]	CC	AA	_	CC	_	_	_	_	_	CC	GG	AA	X_X	X_X
17._RUQ_86	AG	AA	_	AG	CC	AG	_	AG	AG	GG	CG	AA	X_X	X_X

Input profile: MAN_15_/2_[BRA] RUQ_86

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._MAN_15_/2_[BRA] RUQ_86

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

5._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

8._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

9._MAN_15_/2_[BRA] RUQ_86

93.5 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

12._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

13._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

14._MAN_15_/2_[BRA]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._MAN_15_/2_[BRA] MAN15/2[BRA]

86.8 %
19 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

69.6 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1309	37	TcSNP1439	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484